Effectiveness of Panama as an intercontinental land bridge for large mammals

Habitat fragmentation is a primary driver of wildlife loss, and establishment of biological corridors is a common strategy to mitigate this problem. A flagship example is the Mesoamerican Biological Corridor (MBC), which aims to connect protected forest areas between Mexico and Panama to allow dispersal and gene flow of forest organisms. Because forests across Central America have continued to degrade, the functioning of the MBC has been questioned, but reliable estimates of species occurrence were unavailable. Large mammals are suitable indicators of forest functioning, so we assessed their conservation status across the Isthmus of Panama, the narrowest section of the MBC. We used large-scale camera-trap surveys and hierarchical multispecies occupancy models in a Bayesian framework to estimate the occupancy of 9 medium to large mammals and developed an occupancy-weighted connectivity metric to evaluate species-specific functional connectivity. White-lipped peccary (Tayassu pecari), jaguar (Panthera onca), giant anteater (Myrmecophaga tridactyla), white-tailed deer (Odocoileus virginianus), and tapir (Tapirus bairdii) had low expected occupancy along the MBC in Panama. Puma (Puma concolor), red brocket deer (Mazama temama), ocelot (Leopardus pardalis), and collared peccary (Pecari tajacu), which are more adaptable, had higher occupancy, even in areas with low forest cover near infrastructure. However, the majority of species were subject to ≥1 gap that was larger than their known dispersal distances, suggesting poor connectivity along the MBC in Panama. Based on our results, forests in Darien, Donoso–Santa Fe, and La Amistad International Park are critical for survival of large terrestrial mammals in Panama and 2 areas need restoration.     

Searching for Networks: Ecological Connectivity for Amphibians Under Climate Change

Environmental Management - Ecological connectivity depends on key elements within the landscape, which can support ecological fluxes, species richness and long-term viability of a biological...     

Application of the Red List Index for conservation assessment of Spanish vascular plants

The International Union for Conservation of Nature (IUCN) Red List Index (RLI) is used to measure trends in extinction risk of species over time. The development of 2 red lists for Spanish vascular flora during the past decade allowed us to apply the IUCN RLI to vascular plants in an area belonging to a global biodiversity hotspot. We used the Spanish Red Lists from 2000 and 2010 to assess changes in level of threat at a national scale and at the subnational scales of Canary Islands, Balearic Islands, and peninsular Spain. We assigned retrospective IUCN categories of threat to 98 species included in the Spanish Red List of 2010 but absent in the Spanish Red List of 2000. In addition, we tested the effect of different random and taxonomic and spatial Spanish samples on the overall RLI value. From 2000 to 2010, the IUCN categories of 768 species changed (10% of Spanish flora), mainly due to improved knowledge (63%), modifications in IUCN criteria (14%), and changes in threat status (12%). All measured national and subnational RLI values decreased during this period, indicating a general decline in the conservation status of the Spanish vascular flora. The Canarian RLI value (0.84) was the lowest, although the fastest deterioration in conservation status occurred on peninsular Spain (from 0.93 in 2000 to 0.92 in 2010). The RLI values based on subsamples of the Spanish Red List were not representative of RLI values for the entire country, which would discourage the use of small areas or small taxonomic samples to assess general trends in the endangerment of national biotas. The role of the RLI in monitoring of changes in biodiversity at the global and regional scales needs further reassessment because additional areas and taxa are necessary to determine whether the index is sufficiently sensitive for use in assessing temporal changes in species’ risk of extinction.     

Assessment of Aquifer Vulnerability in an Agricultural Area in Spain Using the DRASTIC Model

The assessment of aquifer vulnerability is a very important task, especially in agricultural areas because the quality and availability of groundwater affects both the sustainability of agriculture and the quality of life. In this study, an integrated approach is considered, with the use of the generic and agricultural DRASTIC models as well as a geographic information system (GIS), to assess groundwater vulnerability in the agricultural area of Barrax, in the province of Albacete, in Spain. Seven parameters—depth to water, net recharge, aquifer media, soil media, topography, impact of vadose zone media, and hydraulic conductivity of the aquifer (DRASTIC)—have been considered as weighted layers to enable an accurate groundwater risk mapping. The results of the generic DRASTIC model indicated very low vulnerability to contamination for Barrax groundwater due to limited urban and industrial development in the wider area. However, agricultural activities impose pressure to groundwater resources and the results of the agricultural DRASTIC model show that 6.86% of the study area is characterized by very high, 2.29% by high, 47.28% by medium, 38.28% by low, and the remaining 5.29% by no vulnerability to groundwater contamination. The distribution of nitrate concentration in groundwater in the area under study is quite well correlated with the agricultural DRASTIC vulnerability index. Sensitivity analysis was also performed to acknowledge statistical uncertainty in the estimation of each parameter used, to assess its impact, and thus to identify the most critical parameters that require further investigation. Depth to water and impact of vadose zone are the parameters that had the most noticeable impact on the generic DRASTIC vulnerability index followed by the soil media and topography. In contrast, the agricultural DRASTIC method is more sensitive to the removal of the depth to water parameter followed by the topography and the soil media parameters.     

Colonization and early succession on artificial hard substrata by meiofauna

An experiment was undertaken at Farol Island, Brazil, to examine colonization of bare aluminium surfaces by microbes and meiofauna. It was hypothesized that a primary source of meiofaunal colonists was sediment resuspended during upwelling events, two of which occurred during the experiment. Microbial biofilms formed on the experimental substrata within 1 day, and continued to develop throughout the experimental period. Among meiofaunal groups copepods also appeared on the first day, and nematodes on the second. Meiofaunal community structure developed in three main phases: an initial phase of 2 days, characterized by low abundances of copepods; a second phase during the first upwelling period characterized by higher abundances of copepods and also by turbellarians; and a third phase from day 13 onwards characterized by relatively stable abundances of a range of taxa including copepods, cirripedes, nematodes and ostracods. Nematode assemblages also developed in three phases, but with different timings coinciding with upwelling events: an initial phase, from the beginning of the experiment to day 9, characterized by few species and low (or no) abundances; a second phase following the first upwelling characterized by moderate abundances of Chromadorina, Chromadorella, Daptonema and Euchromadora sp. 3; a third phase following the second upwelling period (from day 26 onwards) in which Daptonema disappeared and the assemblage was characterized by moderate to high abundances of Euchromadora (species 1 and 2) and Chromadorella. Although shifts in nematode assemblage structure coincided with upwelling events no evidence was found for sediments being the primary source of colonizers on the aluminium substrata, in contrast to our hypothesis.     

Genetic differentiation of the California spiny lobster Panulirus interruptus (Randall, 1840) along the west coast of the Baja California Peninsula, Mexico

Identifying reproductive stocks in commercial species is relevant to fishery management strategies. We obtained muscle samples of California spiny lobster (Panulirus interruptus) from six localities along the west coast of the Baja California Peninsula and analyzed the genetic structure using mtDNA RFLPs. Our results indicated that all localities shared the same major haplotypes and showed a spatial homogeneity in the distribution of haplotype frequencies. An analysis of molecular variance indicated that only 0.84% of the genetic variability was explained by differences among localities and was not significantly different from zero. Weak divergences were found between Bahía Magdalena, the most southerly locality, in relation to other populations. Major oceanographic processes along this coast, combined with a long larval period that supports passive transport among localities, are suggested to explain the results.     

Functional responses of copepod nauplii using a high efficiency gut fluorescence technique

To investigate copepod nauplii ingestion rates on phytoplankton, we have adapted the traditional gut fluorescence technique as it can be used with lower gut pigment concentrations. With the improved technique, laboratory experiments were performed to estimate functional responses for nauplii of Calanus helgolandicus and Centropages typicus. Nauplii were raised from eggs to copepodites and the experiments were performed with stages NIV-NV. Gut evacuation rates and ingestion rates were measured on Isochrysis galbana at different concentrations. Specific ingestion rates ranged between 0.038–0.244 μg C μg⁻¹ nauplii C d⁻¹ for C. typicus and 0.041–1.412 μg C μg⁻¹ nauplii C d⁻¹ for C. helgolandicus. Both species showed a type III functional response, reaching a saturation concentration at around 600 μgC l⁻¹ for C. typicus and 800 μgC l⁻¹ for C. helgolandicus. An erratum to this article can be found at     

Fluid flow and solute transport in a network of channels

A new model to describe flow and transort in fractured rocks is proposed. It is based on the concept of a network of channels. The individual channel members are given stochastically selected conductances and volumes. Flow-rate calculations have been performed. For large standard deviations in conductances, channeling becomes pronounced with most of the water flowing in a few paths. The effluent patterns and flow-rate distributions obtained in the simulations have been compared to three field measurements in drifts and tunnels of flow-rate distributions. Standard deviations of channel conductances were between 1.6 and 2.4 in some cases. A particle-following technique was used to simulate solute transport in the network. Non-sorbing as well as sorbing solute transport can be simulated. By using a special technique, solutes that diffuse into the rock matrix can also be simulated.     

Results and evaluation of the first study of organochlorine contaminants (PCDDs, PCDFs, PCBs and DDTs), heavy metals and metalloids in birds from Baja California, México

Organochlorine compounds (OCs) including polychlorinated dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), polychlorinated biphenyls (PCBs) and 1,1-dichloro-2,2-bis(p-chlorophenyl)ethylene (p-p'-DDE), heavy metals (Pb, Cd, Zn, Cu), and arsenic were measured in house sparrows (Passer domesticus) and common ground doves (Columbina passerina) from Baja California Sur, México. Concentrations of PCDD/Fs were low, with 21 pg/g for house sparrows, and 7.7 pg/g for common ground doves. Non-ortho-PCB concentrations in house sparrow and common ground doves were 58 and 254 pg/g, respectively, and are within the highest concentrations reported in species that are in the low levels of food webs. The major differences in organochlorine levels between species were found for ortho-PCBs and DDTs. ortho-PCB levels were higher in the seedeater species, whereas DDT levels were higher in the omnivorous species. Heavy metal levels were far below those associated with negative effects.